Well it's still NaruSaku, the ending can go jump off a cliff for all I care.
Others...lets see.
LuffyxNami (Though not so much over the past five plus years as the manga has not had much interaction between the two.
NatsuxLucy, in Fairy Tail, but I was more NatsuxErza first and don't mind NatsuxLisanna much either.
RavexEllie from Rave master is a much better version of NaLu in my opinion.
EdxWinry from FMA, and HachikenxMikage from Silver Spoon, this mangaka knows how to write a convincing two way romance build up.
I guess I still ship RukiaxIchigo in Bleach but honestly the two have interacted so little in the past few years I might be ok with IchixHime.
Though for recent stuff I'd say.
SoumaxErina from Shougeki no Souma,
HachimanxYukinon from Yahari Snafu is good fun, though HachixYui is kinda cute but prefer Yukinon.
MaouxEri from Devil is a part timer is probably my favourite at the moment. those two are awesome, we really need a second and third season.
Oh I can't forget InamiXSouta and YachiyoxSatou from Working, hoping the two get together in the third season.